City Research Online

MacroSight: A novel framework to analyze the shape and movement of interacting macrophages using MAtLABR †

Solís-Lemus, JA, Stramer, B, Slabaugh, G and Reyes-Aldasoro, CC ORCID: 0000-0002-9466-2018 (2019). MacroSight: A novel framework to analyze the shape and movement of interacting macrophages using MAtLABR †. Journal of Imaging, 5(1), 17.. doi: 10.3390/jimaging5010017

Abstract

This paper presents a novel software framework, called macrosight, which incorporates routines to detect, track, and analyze the shape and movement of objects, with special emphasis on macrophages. The key feature presented in macrosight consists of an algorithm to assess the changes of direction derived from cell-cell contact, where an interaction is assumed to occur. The main biological motivation is the determination of certain cell interactions influencing cell migration. Thus, the main objective of this work is to provide insights into the notion that interactions between cell structures cause a change in orientation. Macrosight analyzes the change of direction of cells before and after they come in contact with another cell. Interactions are determined when the cells overlap and form clumps of two or more cells. The framework integrates a segmentation technique capable of detecting overlapping cells and a tracking framework into a tool for the analysis of the trajectories of cells before and after they overlap. Preliminary results show promise into the analysis and the hypothesis proposed, and lays the groundwork for further developments. The extensive experimentation and data analysis show, with statistical significance, that under certain conditions, the movement changes before and after an interaction are different from movement in controlled cases.

Publication Type: Article
Additional Information: © 2019 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license.
Publisher Keywords: segmentation; macrophages; overlapping objects; shape analysis; movement analysis
Subjects: Q Science > QR Microbiology
T Technology > TK Electrical engineering. Electronics Nuclear engineering
Departments: School of Mathematics, Computer Science & Engineering > Engineering
URI: http://openaccess.city.ac.uk/id/eprint/22139
[img]
Preview
Text - Published Version
Available under License Creative Commons Attribution.

Download (2MB) | Preview

Export

Downloads

Downloads per month over past year

View more statistics

Actions (login required)

Admin Login Admin Login