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Computational Image Analysis Techniques, Programming Languages and Software Platforms Used in Cancer Research: A Scoping Review

Youssef, A. & Reyes Aldasoro, C. C. ORCID: 0000-0002-9466-2018 (2022). Computational Image Analysis Techniques, Programming Languages and Software Platforms Used in Cancer Research: A Scoping Review. In: Medical Image Understanding and Analysis. MIUA 2022. . Springer. ISBN 978-3-031-12052-7 doi: 10.1007/978-3-031-12053-4_61

Abstract

Background: Cancer-related research, as indicated by the number of entries in Medline, the National Library of Medicine of the USA, has dominated the medical literature. An important component of this research is based on the use of computational techniques to analyse the data produced by the many acquisition modalities. This paper presents a review of the computational image analysis techniques that have been applied to cancer. The review was performed through automated mining of Medline/PubMed entries with a combination of keywords. In addition, the programming languages and software platforms through which these techniques are applied were also reviewed.

Methods: Automatic mining of Medline/PubMed was performed with a series of specific keywords that identified different computational techniques. These keywords focused on traditional image processing and computer vision techniques, machine learning techniques, deep learning techniques, programming languages and software platforms.

Results: The entries related to traditional image processing and computer vision techniques have decreased at the same time that machine learning and deep learning have increased significantly. Within deep learning, the keyword that returned the highest number of entries was convolutional neural network. Within the programming languages and software environments, Fiji and ImageJ were the most popular, followed by Matlab, R, and Python. Within the more specialised softwares, QuPath has had a sharp growth overtaking other platforms like ICY and CellProfiler.

Conclusions: The techniques of artificial intelligence techniques and deep learning have grown to overtake most other image analysis techniques and the trend at which they grow is still rising. The most used technique has been convolutional neural networks, commonly used to analyse and classify images. All the code related to this work is available through

GitHub: https://github.com/youssefarafat/Scoping-Review.

Publication Type: Conference or Workshop Item (Paper)
Additional Information: This version of the contribution has been accepted for publication, after peer review but is not the Version of Record and does not reflect post-acceptance improvements, or any corrections. The Version of Record is available online at: http://dx.doi.org/10.1007/978-3-031-12053-4_61. Use of this Accepted Version is subject to the publisher’s Accepted Manuscript terms of use https://www.springernature.com/gp/open-research/policies/accepted-manuscript-terms
Subjects: Q Science > QA Mathematics > QA75 Electronic computers. Computer science
R Medicine > RC Internal medicine > RC0254 Neoplasms. Tumors. Oncology (including Cancer)
Departments: School of Science & Technology > Computer Science > giCentre
[img] Text - Accepted Version
This document is not freely accessible until 25 July 2023 due to copyright restrictions.
Available under License Creative Commons Attribution Non-commercial No Derivatives.

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