Items where Author is "Karabağ, C."
Article
Ortega-Ruíz, M. A., Karabağ, C., Roman-Rangel, E. & Reyes-Aldasoro, C. C. ORCID: 0000-0002-9466-2018 (2024). DRD-UNet, a UNet-like architecture for multi-class breast cancer semantic segmentation. IEEE Access, 12, pp. 40412-40424. doi: 10.1109/access.2024.3377428
Karabağ, C. ORCID: 0000-0003-4424-0471, Ortega-Ruiz, M. A. & Reyes-Aldasoro, C. C. ORCID: 0000-0002-9466-2018 (2023). Impact of Training Data, Ground Truth and Shape Variability in the Deep Learning-Based Semantic Segmentation of HeLa Cells Observed with Electron Microscopy. Journal of Imaging, 9(3), article number 59. doi: 10.3390/jimaging9030059
Karabağ, C. ORCID: 0000-0003-4424-0471, Jones, M. L. & Reyes-Aldasoro, C. C. ORCID: 0000-0002-9466-2018 (2021). Volumetric Semantic Instance Segmentation of the Plasma Membrane of HeLa Cells. Journal of Imaging, 7(6), article number 93. doi: 10.3390/jimaging7060093
Ananda, A., Ngan, K. H. ORCID: 0000-0001-7623-942X, Karabağ, C. ORCID: 0000-0003-4424-0471 , Ter-Sarkisov, A., Alonso, E. ORCID: 0000-0002-3306-695X & Reyes-Aldasoro, C. C. ORCID: 0000-0002-9466-2018 (2021). Classification and Visualisation of Normal and Abnormal Radiographs: a comparison between Eleven Convolutional Neural Network Architectures. Sensors, 21(16), article number 5381. doi: 10.3390/s21165381
Ortega-Ruiz, M. A., Karabağ, C. ORCID: 0000-0003-4424-0471, Garduño, V. G. & Reyes-Aldasoro, C. C. ORCID: 0000-0002-9466-2018 (2020). Morphological Estimation of Cellularity on Neo-Adjuvant Treated Breast Cancer Histological Images. Journal of Imaging, 6(10), article number 101. doi: 10.3390/jimaging6100101
Karabağ, C. ORCID: 0000-0003-4424-0471, Jones, M. L., Peddie, C. J. , Weston, A. E., Collinson, L. M. & Reyes-Aldasoro, C. C. ORCID: 0000-0002-9466-2018 (2020). Semantic segmentation of HeLa cells: An objective comparison between one traditional algorithm and four deep-learning architectures. PLOS ONE, 15(10), article number e0230605. doi: 10.1371/journal.pone.0230605
Karabağ, C. ORCID: 0000-0003-4424-0471, Verhoeven, J. ORCID: 0000-0002-0738-8517, Miller, N. & Reyes-Aldasoro, C. C. ORCID: 0000-0002-9466-2018 (2019). Texture Segmentation: An Objective Comparison between Five Traditional Algorithms and a Deep-Learning U-Net Architecture. Applied Sciences, 9(18), article number 3900. doi: 10.3390/app9183900
Karabağ, C. ORCID: 0000-0003-4424-0471, Jones, M. L., Peddie, C. J. , Weston, A. E., Collinson, L. M. & Reyes-Aldasoro, C. C. ORCID: 0000-0002-9466-2018 (2019). Segmentation and Modelling of the Nuclear Envelope of HeLa Cells Imaged with Serial Block Face Scanning Electron Microscopy. Journal of Imaging, 5(9), article number 75. doi: 10.3390/jimaging5090075
Karabağ, C. ORCID: 0000-0003-4424-0471, Verhoeven, J. ORCID: 0000-0002-0738-8517, Miller, N. & Reyes-Aldasoro, C. C. ORCID: 0000-0002-9466-2018 (2019). Texture Segmentation: An Objective Comparison between Traditional and Deep-Learning Methodologies. Preprints, doi: 10.20944/preprints201908.0001.v1
Karabağ, C. ORCID: 0000-0003-4424-0471, Jones, M. L., Peddie, C. J. , Weston, A. E., Collinson, L. M. & Reyes-Aldasoro, C. C. ORCID: 0000-0002-9466-2018 (2019). Segmentation and modelling of hela nuclear envelope. 2019 IEEE 16th International Symposium on Biomedical Imaging (ISBI 2019), pp. 1510-1513. doi: 10.1109/ISBI.2019.8759151
Karabağ, C. ORCID: 0000-0003-4424-0471, Jones, M. L., Peddie, C. J. , Weston, A. E., Collinson, L. M. & Reyes-Aldasoro, C. C. ORCID: 0000-0002-9466-2018 (2018). Automated Segmentation of HeLa Nuclear Envelope from Electron Microscopy Images. Communications in Computer and Information Science, doi: 10.1007/978-3-319-95921-4_23
Conference or Workshop Item
Brito-Pacheco, D., Karabağ, C., Brito-Loeza, C. , Giannopoulos, P. ORCID: 0000-0002-6261-1961 & Reyes Aldasoro, C. C. ORCID: 0000-0002-9466-2018 (2024). Relationship between irregularities of the nuclear envelope and mitochondria in hela cells observed with electron microscopy. Paper presented at the IEEE International Symposium on Biomedical Imaging, 27-30 May 2024, Athens, Greece. doi: 10.1109/ISBI56570.2024.10635639
Rada, L., Azzawi, I., Kumar, P. , Brito-Loeza, C. F., Karabağ, C. & Reyes-Aldasoro, C. C. ORCID: 0000-0002-9466-2018 (2024). Image Processing and Machine Learning Techniques for Chagas Disease Detection and Identification. In: Medical Image Understanding and Analysis Proceedings Part I. 28th Annual Conference Medical Image Understanding and Analysis, 24-26 Jul 2024, Manchester, UK. doi: 10.1007/978-3-031-66955-2_14
Ananda, Karabağ, C. ORCID: 0000-0003-4424-0471, Ter-Sarkisov, A. ORCID: 0000-0002-1300-6132 , Alonso, E. ORCID: 0000-0002-3306-695X & Reyes-Aldasoro, C. C. ORCID: 0000-0002-9466-2018 (2020). Radiography Classification: A comparison between Eleven Convolutional Neural Networks. In: 2020 Fourth International Conference on Multimedia Computing, Networking and Applications (MCNA). 2020 Fourth International Conference on Multimedia Computing, Networking and Applications (MCNA), 19-22 Oct 2020, Online. doi: 10.1109/MCNA50957.2020.9264285
Other
Brito-Pacheco, D., Karabağ, C., Brito-Loeza, C. , Giannopoulos, P. ORCID: 0000-0002-6261-1961 & Reyes-Aldasoro, C. C. ORCID: 0000-0002-9466-2018 (2023). Relationship Between Irregularities of the Nuclear Envelope and Mitochondria in HeLa cells Observed with Electron Microscopy. doi: 10.1101/2023.11.14.567016
Ortega-Ruiz, M. A., Karabağ, C. ORCID: 0000-0003-4424-0471, García Garduño, V. & Reyes-Aldasoro, C. C. ORCID: 0000-0002-9466-2018 (2020). Morphological estimation of Cellularity on Neo-adjuvant treated breast cancer histological images. doi: 10.1101/2020.04.01.020719
Ortega-Ruiz, M. A., Karabağ, C. ORCID: 0000-0003-4424-0471, Garduño, V. G. & Reyes-Aldasoro, C. C. ORCID: 0000-0002-9466-2018 (2011). Estimation of cellularity in tumours treated with Neoadjuvant therapy: A comparison of Machine Learning algorithms. doi: 10.1101/2020.04.09.034348
Thesis
Karabağ, C. ORCID: 0000-0003-4424-0471 (2020). Volumetric analysis of HeLa cancer cells imaged with serial block face scanning electron microscopy. (Unpublished Doctoral thesis, City, University of London)
Working Paper
Karabağ, C., Jones, M. L., Peddie, C. J. , Weston, A. E., Collinson, L. M. & Reyes-Aldasoro, C. C. ORCID: 0000-0002-9466-2018 (2020). Geometric differences between nuclear envelopes of Wild-type and Chlamydia trachomatis-infected HeLa cells (10.1101/2020.04.02.021733). .